Flavio Seno: search on Z-Library

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1

Random diffusivity from stochastic equations: comparison of two models for Brownian yet non-Gaussian diffusion

Sposini, Vittoria, Chechkin, Alexei, Seno, Flavio, Pagnini, Gianni, Metzler, Ralf

Journal:

New Journal of Physics

Year:

2018

Language:

english

File:

PDF, 4.49 MB

english, 2018

2

Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion

Maji, Jaya, Seno, Flavio, Trovato, Antonio, Bhattacharjee, Somendra M

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2017

Language:

english

File:

PDF, 1.20 MB

english, 2017

3

Deposition growth modes from numerical simulations

Ko, David Y. K., Seno, Flavio

Journal:

Physical Review B

Year:

1994

Language:

english

File:

PDF, 511 KB

english, 1994

4

Brownian yet Non-Gaussian Diffusion: From Superstatistics to Subordination of Diffusing Diffusivities

Chechkin, Aleksei V., Seno, Flavio, Metzler, Ralf, Sokolov, Igor M.

Journal:

Physical Review X

Year:

2017

Language:

english

File:

PDF, 550 KB

english, 2017

5

Learning effective amino acid interactions through iterative stochastic techniques

Cristian Micheletti, Flavio Seno, Jayanth R. Banavar, Amos Maritan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 144 KB

english, 2001

6

New trends in modern statistical physics

Giorgio Kaniadakis, Antonio M. Scarfone, Flavio Seno

Journal:

Central European Journal of Physics

Year:

2012

Language:

english

File:

PDF, 826 KB

english, 2012

7

Sequence repeats and protein structure

Hoang, Trinh X., Trovato, Antonio, Seno, Flavio, Banavar, Jayanth R., Maritan, Amos

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 385 KB

english, 2012

8

A new perspective on analysis of helix–helix packing preferences in globular proteins

Antonio Trovato, Flavio Seno

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 271 KB

english, 2004

9

A Self-Consistent Knowledge-Based Approach to Protein Design

Rossi, Andrea, Micheletti, Cristian, Seno, Flavio, Maritan, Amos

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 424 KB

english, 2001

10

Modeling quorum sensing trade-offs between bacterial cell density and system extension from open boundaries

Marenda, Mattia, Zanardo, Marina, Trovato, Antonio, Seno, Flavio, Squartini, Andrea

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.01 MB

english, 2016

11

Exploring the correlation between the folding rates of proteins and the entanglement of their native states

Baiesi, Marco, Orlandini, Enzo, Seno, Flavio, Trovato, Antonio

Journal:

Journal of Physics A Mathematical and Theoretical

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

12

Recurrent oligomers in proteins: An optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies

Cristian Micheletti, Flavio Seno, Amos Maritan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 243 KB

english, 2000

13

Fork, and Triple Point

Kapri, Rajeev, Bhattacharjee, Somendra M., Seno, Flavio

Journal:

Physical Review Letters

Year:

2004

Language:

english

File:

PDF, 164 KB

english, 2004

14

Protein Structures and Optimal Folding from a Geometrical Variational Principle

Micheletti, Cristian, Banavar, Jayanth R., Maritan, Amos, Seno, Flavio

Journal:

Physical Review Letters

Year:

1999

Language:

english

File:

PDF, 200 KB

english, 1999

15

Vibrational entropy estimation can improve binding affinity prediction for non-obligatory protein complexes

Škrbić, Tatjana, Zamuner, Stefano, Hong, Rolando, Seno, Flavio, Laio, Alessandro, Trovato, Antonio

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 674 KB

english, 2018

16

Quorum vs. diffusion sensing: a quantitative analysis of the relevance of absorbing or reflecting boundaries

Trovato, Antonio, Seno, Flavio, Zanardo, Marina, Alberghini, Sara, Tondello, Alessandra, Squartini, Andrea

Journal:

FEMS Microbiology Letters

Year:

2014

Language:

english

File:

PDF, 540 KB

english, 2014

17

Phase diagram of branched polymer collapse

Henkel, Malte, Seno, Flavio

Journal:

Physical Review E

Year:

1996

File:

PDF, 1.60 MB

1996

18

Maximum Entropy Approach for Deducing Amino Acid Interactions in Proteins

Seno, Flavio, Trovato, Antonio, Banavar, Jayanth R., Maritan, Amos

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 114 KB

english, 2008

19

Native fold and docking pose discrimination by the same residue-based scoring function

Sarti, Edoardo, Granata, Daniele, Seno, Flavio, Trovato, Antonio, Laio, Alessandro

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 468 KB

english, 2015

20

Optical tweezers in single-molecule experiments

Zaltron, Annamaria, Merano, Michele, Mistura, Giampaolo, Sada, Cinzia, Seno, Flavio

Journal:

The European Physical Journal Plus

Year:

2020

File:

PDF, 1.71 MB

2020

21

Design of proteins with hydrophobic and polar amino acids

Cristian Micheletti, Flavio Seno, Amos Maritan, Jayanth R. Banavar

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 279 KB

english, 1998

22

Melting behavior and different bound states in three-stranded DNA models

Maji, Jaya, Bhattacharjee, Somendra M., Seno, Flavio, Trovato, Antonio

Journal:

Physical Review E

Year:

2014

Language:

english

File:

PDF, 609 KB

english, 2014

23

Determination of interaction potentials of amino acids from native protein structures: Tests on simple lattice models

van Mourik, Jort, Clementi, Cecilia, Maritan, Amos, Seno, Flavio, Banavar, Jayanth R.

Journal:

The Journal of Chemical Physics

Year:

1999

Language:

english

File:

PDF, 530 KB

english, 1999

24

Adsorptionlike Collapse of Diblock Copolymers

Orlandini, Enzo, Seno, Flavio, Stella, Attilio L.

Journal:

Physical Review Letters

Year:

2000

Language:

english

File:

PDF, 76 KB

english, 2000

25

Self-avoiding walks in the presence of strongly correlated, annealed vacancies

Seno, Flavio, Stella, Attilio, Vanderzande, Carlo

Journal:

Physical Review Letters

Year:

1990

Language:

english

File:

PDF, 689 KB

english, 1990

26

Simulations of deposition growth models in various dimensions: The possible importance of overhangs

Ko, David Y. K., Seno, Flavio

Journal:

Physical Review E

Year:

1994

File:

PDF, 674 KB

1994

27

Signature of Pareto optimization in the Escherichia coli proteome

Koçillari, Loren, Fariselli, Piero, Trovato, Antonio, Seno, Flavio, Maritan, Amos

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.86 MB

english, 2018

28

Structure-based design of model proteins

Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Gautham Nadig, Flavio Seno, Saraswathi Vishveshwara

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 117 KB

english, 1998

29

Assembly of protein tertiary structures from secondary structures using optimized potentials

Trinh Xuan Hoang, Flavio Seno, Jayanth R. Banavar, Marek Cieplak, Amos Maritan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 726 KB

english, 2003

30

Optimal path and directed percolation

Rios, Paolo De Los, Caldarelli, Guido, Maritan, Amos, Seno, Flavio

Journal:

Physical Review E

Year:

1996

File:

PDF, 621 KB

1996

31

Unified perspective on proteins: A physics approach

Banavar, Jayanth R., Hoang, Trinh X., Maritan, Amos, Seno, Flavio, Trovato, Antonio

Journal:

Physical Review E

Year:

2004

Language:

english

File:

PDF, 1.22 MB

english, 2004

32

Bacterial bioluminescence onset and quenching: a dynamical model for a quorum sensing -mediated property

Side, Domenico Delle, Nassisi, Vincenzo, Pennetta, Cecilia, Alifano, Pietro, Di Salvo, Marco, Talà, Adelfia, Chechkin, Aleksei, Seno, Flavio, Trovato, Antonio

Journal:

Royal Society Open Science

Year:

2017

Language:

english

File:

PDF, 747 KB

english, 2017

33

An Efficient Algorithm to Perform Local Concerted Movements of a Chain Molecule

Zamuner, Stefano, Rodriguez, Alex, Seno, Flavio, Trovato, Antonio, Roccatano, Danilo

Journal:

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

34

Insight into the Structure of Amyloid Fibrils from the Analysis of Globular Proteins

Trovato, Antonio, Chiti, Fabrizio, Maritan, Amos, Seno, Flavio

Journal:

PLoS Computational Biology

Year:

2006

Language:

english

File:

PDF, 418 KB

english, 2006

35

Marginal compactness of protein native structures

Hoang, Trinh X, Trovato, Antonio, Seno, Flavio, Banavar, Jayanth R, Maritan, Amos

Journal:

Journal of Physics Condensed Matter

Year:

2006

Language:

english

File:

PDF, 409 KB

english, 2006

36

Exploring by Enhanced Sampling Techniques: The Protein’s Conformational Space Beyond the PDB

Tejada, Pilar Cossio, Trovato, Antonio, Seno, Flavio, Pietrucci, Fabio, Maritan, Amos, Laio, Alessandro

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 91 KB

english, 2011

37

Protein Design in a Lattice Model of Hydrophobic and Polar Amino Acids

Micheletti, Cristian, Seno, Flavio, Maritan, Amos, Banavar, Jayanth R.

Journal:

Physical Review Letters

Year:

1998

Language:

english

File:

PDF, 94 KB

english, 1998

38

Inference of the solvation energy parameters of amino acids using maximum entropy approach

Hoang, Trinh X., Seno, Flavio, Trovato, Antonio, Banavar, Jayanth R., Maritan, Amos

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 261 KB

english, 2008

39

Interaction potentials for protein folding

Flavio Seno, Amos Maritan, Jayanth R. Banavar

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 56 KB

english, 1998

40

Boundary critical behavior ofd=2 self-avoiding walks on correlated and uncorrelated vacancies

Attilio L. Stella, Flavio Seno, Carlo Vanderzande

Journal:

Journal of Statistical Physics

Year:

1993

Language:

english

File:

PDF, 1.38 MB

english, 1993

41

Geometry of proteins: Hydrogen bonding, sterics, and marginally compact tubes

Banavar, Jayanth R., Cieplak, Marek, Flammini, Alessandro, Hoang, Trinh X., Kamien, Randall D., Lezon, Timothy, Marenduzzo, Davide, Maritan, Amos, Seno, Flavio, Snir, Yehuda, Trovato, Antonio

Journal:

Physical Review E

Year:

2006

Language:

english

File:

PDF, 58 KB

english, 2006

42

Exploring the Universe of Protein Structures beyond the Protein Data Bank

Cossio, Pilar, Trovato, Antonio, Pietrucci, Fabio, Seno, Flavio, Maritan, Amos, Laio, Alessandro, Lai, Luhua

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 2.28 MB

english, 2010

43

Consequences of relative cellular positioning on quorum sensing and bacterial cell-to-cell communication

Sara Alberghini, Elisa Polone, Viviana Corich, Milena Carlot, Flavio Seno, Antonio Trovato, Andrea Squartini

Journal:

FEMS Microbiology Letters

Year:

2009

Language:

english

File:

PDF, 283 KB

english, 2009

44

A measure of data collapse for scaling

Bhattacharjee, Somendra M, Seno, Flavio

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

2001

Language:

english

File:

PDF, 114 KB

english, 2001

45

Fibril elongation mechanisms of HET-s prion-forming domain: Topological evidence for growth polarity

Marco Baiesi, Flavio Seno, Antonio Trovato

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.67 MB

english, 2011

46

Strategies for protein folding and design

Cristian Micheletti, Flavio Seno, Amos Maritan, Jayanth R. Banavar

Journal:

Annals of Combinatorics

Year:

1999

Language:

english

File:

PDF, 1.47 MB

english, 1999

47

Unraveling the Schneeberg garnet puzzle: a numerical model of multiple nucleation and coalescence

HarveyT. Dobbs, Luca Peruzzo, Flavio Seno, Richard Spiess, DavidJ. Prior

Journal:

Contributions to Mineralogy and Petrology

Year:

2003

Language:

english

File:

PDF, 1.24 MB

english, 2003

48

Steric Constraints in Model Proteins

Micheletti, Cristian, Banavar, Jayanth R., Maritan, Amos, Seno, Flavio

Journal:

Physical Review Letters

Year:

1998

Language:

english

File:

PDF, 119 KB

english, 1998

49

A simple and efficient statistical potential for scoring ensembles of protein structures

Cossio, Pilar, Granata, Daniele, Laio, Alessandro, Seno, Flavio, Trovato, Antonio

Journal:

Scientific Reports

Year:

2012

Language:

english

File:

PDF, 440 KB

english, 2012

50

Polymers with a bimodal disorder distribution and directed percolation

Rios, Paolo De Los, Maritan, Amos, Seno, Flavio

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

1997

Language:

english

File:

PDF, 92 KB

english, 1997

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